Use sqlite3_file_control(SQLITE_FCNTL_PERSIST_WAL) to persist WAL

Previously, Litestream would avoid closing the SQLite3 connection
in order to ensure that the WAL file was not cleaned up by the
database if it was the last connection. This commit changes the
behavior by introducing a file control call to perform the same
action. This allows us to close the database file normally in all
cases.

cmd/litestream/replicate.go

@@ -181,7 +181,7 @@ func (c *ReplicateCommand) Run(ctx context.Context) (err error) {
 // Close closes all open databases.
 func (c *ReplicateCommand) Close() (err error) {
 	for _, db := range c.DBs {
-		if e := db.SoftClose(); e != nil {
+		if e := db.Close(); e != nil {
 			log.Printf("error closing db: path=%s err=%s", db.Path(), e)
 			if err == nil {
 				err = e